PhytophthoraV1, Main, Exploration, bibRecord, 000C66

Diversity, evolution and expression profiles of histone acetyltransferases and deacetylases in oomycetes.

Identifieur interne : 000C66 ( Main/Exploration ); précédent : 000C65; suivant : 000C67

Diversity, evolution and expression profiles of histone acetyltransferases and deacetylases in oomycetes.

Auteurs : Xiao-Wen Wang [République populaire de Chine] ; Li-Yun Guo [République populaire de Chine] ; Miao Han [République populaire de Chine] ; Kun Shan [République populaire de Chine]

Source :

BMC genomics [ 1471-2164 ] ; 2016.

RBID : pubmed:27852223

Descripteurs français

KwdFr :
- ARN (isolement et purification), ARN (métabolisme), Acétylation (MeSH), Bases de données génétiques (MeSH), Histone acetyltransferases (classification), Histone acetyltransferases (génétique), Histone acetyltransferases (métabolisme), Histone deacetylases (classification), Histone deacetylases (génétique), Histone deacetylases (métabolisme), Oomycetes (génétique), Oomycetes (métabolisme), Phylogenèse (MeSH), Phytophthora (métabolisme), Réaction de polymérisation en chaine en temps réel (MeSH), Transcriptome (MeSH), Évolution moléculaire (MeSH).
MESH :
- classification : Histone acetyltransferases, Histone deacetylases.
- génétique : Histone acetyltransferases, Histone deacetylases, Oomycetes.
- isolement et purification : ARN.
- métabolisme : ARN, Histone acetyltransferases, Histone deacetylases, Oomycetes, Phytophthora.
- Acétylation, Bases de données génétiques, Phylogenèse, Réaction de polymérisation en chaine en temps réel, Transcriptome, Évolution moléculaire.

English descriptors

KwdEn :
- Acetylation (MeSH), Databases, Genetic (MeSH), Evolution, Molecular (MeSH), Histone Acetyltransferases (classification), Histone Acetyltransferases (genetics), Histone Acetyltransferases (metabolism), Histone Deacetylases (classification), Histone Deacetylases (genetics), Histone Deacetylases (metabolism), Oomycetes (genetics), Oomycetes (metabolism), Phylogeny (MeSH), Phytophthora (metabolism), RNA (isolation & purification), RNA (metabolism), Real-Time Polymerase Chain Reaction (MeSH), Transcriptome (MeSH).
MESH :
- chemical , classification : Histone Acetyltransferases, Histone Deacetylases.
- chemical , genetics : Histone Acetyltransferases, Histone Deacetylases.
- chemical , isolation & purification : RNA.
- chemical , metabolism : Histone Acetyltransferases, Histone Deacetylases, RNA.
- genetics : Oomycetes.
- metabolism : Oomycetes, Phytophthora.
- Acetylation, Databases, Genetic, Evolution, Molecular, Phylogeny, Real-Time Polymerase Chain Reaction, Transcriptome.

Abstract

BACKGROUND

Oomycetes are a group of fungus-like eukaryotes with diverse microorganisms living in marine, freshwater and terrestrial environments. Many of them are important pathogens of plants and animals, causing severe economic losses. Based on previous study, gene expression in eukaryotic cells is regulated by epigenetic mechanisms such as DNA methylation and histone modification. However, little is known about epigenetic mechanisms of oomycetes.

RESULTS

In this study, we investigated the candidate genes in regulating histone acetylation in oomycetes genomes through bioinformatics approaches and identified a group of diverse histone acetyltransferases (HATs) and histone deacetylases (HDACs), along with three putative novel HATs. Phylogenetic analyses suggested that most of these oomycetes HATs and HDACs derived from distinct evolutionary ancestors. Phylogenetic based analysis revealed the complex and distinct patterns of duplications and losses of HATs and HDACs in oomycetes. Moreover, gene expression analysis unveiled the specific expression patterns of the 33 HATs and 11 HDACs of Phytophthora infestans during the stages of development, infection and stress response.

CONCLUSIONS

In this study, we reveal the structure, diversity and the phylogeny of HATs and HDACs of oomycetes. By analyzing the expression data, we provide an overview of the specific biological stages of these genes involved. Our datasets provide useful inputs to help explore the epigenetic mechanisms and the relationship between genomes and phenotypes of oomycetes.

DOI: 10.1186/s12864-016-3285-y
PubMed: 27852223
PubMed Central: PMC5112689

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Histone Acetyltransferases (genetics)</term>
<term>Histone Acetyltransferases (metabolism)</term>
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<term>Histone Deacetylases (genetics)</term>
<term>Histone Deacetylases (metabolism)</term>
<term>Oomycetes (genetics)</term>
<term>Oomycetes (metabolism)</term>
<term>Phylogeny (MeSH)</term>
<term>Phytophthora (metabolism)</term>
<term>RNA (isolation & purification)</term>
<term>RNA (metabolism)</term>
<term>Real-Time Polymerase Chain Reaction (MeSH)</term>
<term>Transcriptome (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ARN (isolement et purification)</term>
<term>ARN (métabolisme)</term>
<term>Acétylation (MeSH)</term>
<term>Bases de données génétiques (MeSH)</term>
<term>Histone acetyltransferases (classification)</term>
<term>Histone acetyltransferases (génétique)</term>
<term>Histone acetyltransferases (métabolisme)</term>
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<term>Histone deacetylases (métabolisme)</term>
<term>Oomycetes (génétique)</term>
<term>Oomycetes (métabolisme)</term>
<term>Phylogenèse (MeSH)</term>
<term>Phytophthora (métabolisme)</term>
<term>Réaction de polymérisation en chaine en temps réel (MeSH)</term>
<term>Transcriptome (MeSH)</term>
<term>Évolution moléculaire (MeSH)</term>
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<keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>Histone Acetyltransferases</term>
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<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Histone Acetyltransferases</term>
<term>Histone Deacetylases</term>
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<term>Histone Deacetylases</term>
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<term>Histone deacetylases</term>
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<term>Bases de données génétiques</term>
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>Oomycetes are a group of fungus-like eukaryotes with diverse microorganisms living in marine, freshwater and terrestrial environments. Many of them are important pathogens of plants and animals, causing severe economic losses. Based on previous study, gene expression in eukaryotic cells is regulated by epigenetic mechanisms such as DNA methylation and histone modification. However, little is known about epigenetic mechanisms of oomycetes.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>RESULTS</b>
</p>
<p>In this study, we investigated the candidate genes in regulating histone acetylation in oomycetes genomes through bioinformatics approaches and identified a group of diverse histone acetyltransferases (HATs) and histone deacetylases (HDACs), along with three putative novel HATs. Phylogenetic analyses suggested that most of these oomycetes HATs and HDACs derived from distinct evolutionary ancestors. Phylogenetic based analysis revealed the complex and distinct patterns of duplications and losses of HATs and HDACs in oomycetes. Moreover, gene expression analysis unveiled the specific expression patterns of the 33 HATs and 11 HDACs of Phytophthora infestans during the stages of development, infection and stress response.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b>
</p>
<p>In this study, we reveal the structure, diversity and the phylogeny of HATs and HDACs of oomycetes. By analyzing the expression data, we provide an overview of the specific biological stages of these genes involved. Our datasets provide useful inputs to help explore the epigenetic mechanisms and the relationship between genomes and phenotypes of oomycetes.</p>
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<Abstract><AbstractText Label="BACKGROUND">Oomycetes are a group of fungus-like eukaryotes with diverse microorganisms living in marine, freshwater and terrestrial environments. Many of them are important pathogens of plants and animals, causing severe economic losses. Based on previous study, gene expression in eukaryotic cells is regulated by epigenetic mechanisms such as DNA methylation and histone modification. However, little is known about epigenetic mechanisms of oomycetes.</AbstractText>
<AbstractText Label="RESULTS">In this study, we investigated the candidate genes in regulating histone acetylation in oomycetes genomes through bioinformatics approaches and identified a group of diverse histone acetyltransferases (HATs) and histone deacetylases (HDACs), along with three putative novel HATs. Phylogenetic analyses suggested that most of these oomycetes HATs and HDACs derived from distinct evolutionary ancestors. Phylogenetic based analysis revealed the complex and distinct patterns of duplications and losses of HATs and HDACs in oomycetes. Moreover, gene expression analysis unveiled the specific expression patterns of the 33 HATs and 11 HDACs of Phytophthora infestans during the stages of development, infection and stress response.</AbstractText>
<AbstractText Label="CONCLUSIONS">In this study, we reveal the structure, diversity and the phylogeny of HATs and HDACs of oomycetes. By analyzing the expression data, we provide an overview of the specific biological stages of these genes involved. Our datasets provide useful inputs to help explore the epigenetic mechanisms and the relationship between genomes and phenotypes of oomycetes.</AbstractText>
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<ReferenceList><Reference><Citation>Nucleic Acids Res. 2013 Jan;41(Database issue):D344-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23161676</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 1997 Sep 18;389(6648):251-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9305837</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Front Zool. 2012 Oct 04;9(1):25</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23035888</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Cell Mol Life Sci. 2001 May;58(5-6):693-703</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11437231</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Genomics. 2010 Jun 03;11:353</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20525264</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Hum Mol Genet. 1998 Feb;7(2):279-84</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9425235</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Semin Cell Dev Biol. 1999 Apr;10 (2):169-77</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10441070</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2006 Sep 1;313(5791):1261-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16946064</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Annu Rev Biochem. 2007;76:75-100</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17362198</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 2009 Sep 17;461(7262):393-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19741609</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2000 Nov 3;290(5493):972-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11062127</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2002 Nov 26;99(24):15507-12</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12438651</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2002 Dec 1;30(23):5036-55</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12466527</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Dev Comp Immunol. 2012 Sep;38(1):44-54</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22522286</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2015 Jan;43(Database issue):D257-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25300481</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Phytopathology. 2012 Apr;102(4):348-64</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22185336</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Biochem J. 2003 Mar 15;370(Pt 3):737-49</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12429021</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Biol Chem. 1995 Oct 20;270(42):24674-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">7559580</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycology. 2014 Jun;5(2):43-51</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24999436</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Annu Rev Phytopathol. 2005;43:309-35</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16078887</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Biol Chem. 2008 Oct 24;283(43):29060-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18753131</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Genet. 1998 Jul;19(3):219-20</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9662389</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13785-90</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19666589</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Microbiol. 2005 Aug 02;5:46</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16076392</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2011 Oct;28(10):2731-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21546353</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Pathol. 2011 Oct;12(8):772-85</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21726377</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Struct Mol Biol. 2008 Jul;15(7):738-45</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18568037</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS Biol. 2011 Jul;9(7):e1001094</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21750662</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell Rep. 2013 Apr;32(4):465-78</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23408190</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Biol Chem. 2001 Dec 14;276(50):47733-41</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11602581</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Gene. 1988 Dec 25;74(1):9-12</Citation>
<ArticleIdList><ArticleId IdType="pubmed">3248734</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Biochem Cell Biol. 2001;79(3):243-52</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11467738</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Fungal Genet Biol. 2007 Aug;44(8):726-39</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17215149</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Ann N Y Acad Sci. 2003 Mar;983:84-100</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12724214</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2003 Jun 13;300(5626):1703-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12805537</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Biochem J. 1963 May;87:258-63</Citation>
<ArticleIdList><ArticleId IdType="pubmed">13943142</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2004 Jun;14(6):1188-90</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15173120</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Gene. 1999 Jun 24;234(1):161-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10393250</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 1999 Jun 3;399(6735):491-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10365964</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Biochem Biophys Res Commun. 2000 Jul 5;273(2):793-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10873683</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2014 Jan;42(Database issue):D222-30</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24288371</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 1964 May;51:786-94</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14172992</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Comput Biol. 2000;7(3-4):429-47</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11108472</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Biol. 2006 Sep 19;16(18):1857-64</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16979565</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Int J Parasitol. 1998 Jan;28(1):11-20</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9504331</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Annu Rev Phytopathol. 2010;48:329-45</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19400636</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Annu Rev Biochem. 2001;70:81-120</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11395403</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Protoplasma. 2012 Jan;249(1):3-19</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21424613</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genes Cancer. 2011 Jun;2(6):607-17</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21941617</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2013 Jul;41(Web Server issue):W349-57</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23748958</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Biomed Biotechnol. 2012;2012:452934</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23093844</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Eukaryot Microbiol. 2005 Sep-Oct;52(5):399-451</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16248873</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Cell. 2008 Aug 22;31(4):449-61</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18722172</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Comput Biol. 2006 Mar;13(2):320-35</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16597243</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 2009 Nov 19;462(7271):315-22</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19829295</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Biol Evol. 2012;4(3):199-211</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22230142</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2011 Jan;39(Database issue):D225-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21109532</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Phytopathology. 2010 Oct;100(10):997-1006</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20839935</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W45-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15215347</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Biol Chem. 1993 Jan 5;268(1):305-14</Citation>
<ArticleIdList><ArticleId IdType="pubmed">8416938</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Opin Genet Dev. 1996 Apr;6(2):176-84</Citation>
<ArticleIdList><ArticleId IdType="pubmed">8722174</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Biol. 2010;11(7):R73</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20626842</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Eukaryot Cell. 2007 Jul;6(7):1200-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17483289</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Biochemistry. 1974 Jan 15;13(2):211-22</Citation>
<ArticleIdList><ArticleId IdType="pubmed">4358939</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2007 Nov 1;23(21):2947-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17846036</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Opin Genet Dev. 2001 Apr;11(2):155-61</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11250138</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Biochem Biophys Res Commun. 2014 Dec 5;455(1-2):3-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25194808</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Microbiology. 2008 May;154(Pt 5):1482-90</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18451057</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 1982 Apr 24;10(8):2709-21</Citation>
<ArticleIdList><ArticleId IdType="pubmed">7079182</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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Diversity, evolution and expression profiles of histone acetyltransferases and deacetylases in oomycetes.

Diversity, evolution and expression profiles of histone acetyltransferases and deacetylases in oomycetes.

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